Workshop Chemical Computing Group, Lecture Hall Tolstoi
Generative Design of New Candidate Compounds in the Binding Pocket
Presenters: Dr. Sarah Witzke and Guido Kirsten, Chemical Computing Group
Computational methods can help plot potential ways forward in a lead optimisation campaign, starting from a ligand-bound crystal structure or a plausible computationally docked structure for a known active lead molecule.
This workshop will demonstrate some of these methods using the Molecular Operating Environment (MOE) software system - culminating in an application to combinatorially enumerate, optimise, filter and assess compounds in the context of their binding site, given a real medicinal chemistry reaction and databases of reagents
Workshop Cresset, Lecture Hall Bethmann
Combating antibiotic resistance through cheminformatics and structure-based virtual screening
Presenter: Oliver Hills, Cresset
In-silico virtual screening campaigns are often launched successfully when focused on diverse, yet molecularly significant, regions of chemical space, making use of accurate machine-learning and physics-based methods designed for bioactive compound identification.
In this workshop, we will delve into the example of Quorum Sensing Inhibition (QSI), an emerging therapeutic strategy to design antimicrobial compounds. QSI molecules stunt bacterial proliferation and nullify bacterial signalling and communication through competitive inhibition of the LasR transcriptional activator. Our mission is to discover novel compounds that can combat the escalating threat of antibiotic resistance and offer new solutions in the face of this global health crisis.During this session, Flare™, Cresset’s platform for ligand- and structure-based molecule design, will guide participants through a comprehensive virtual screening workflow aimed at identifying potent QSI hits. Leveraging open-source compound databases, the screening process will involve careful compound curation and ranked prioritization using advanced methodologies, including ML-QSAR, Molecular Docking, Electrostatic Complementarity and Clustering analysis. This multi-faceted approach ensures a thorough and data-driven exploration of chemical space for optimized hit identification.
Keynote Speaker I
Next Generation Pharmacophore Modeling: Novel Concepts & Tools for Molecular DesignT. Langer, Vienna/AT
C. Kersten, Mainz/DE
H. Baumann, Berlin/DE , I. Alibay, Cambridge/GB, B. Ries, Biberach an der Riss/DE, M. Henry, New York/US, J. Eastwood, New York/US, D. Mobley, Irvine/US
S. Witzke, Cambridge/GB
Keynote Speaker II
Exploring Chemical Space Directly and InverselyA. Tkatchenko, Luxembourg/LU
C. A. Bauer, Göteborg/SE
Keynote Speaker III
Machine learning for low-data drug discovery: lessons learned and opportunitiesF. Grisoni, Eindhoven/NL
Keynote Speaker IV
Challenges for Demonstrating a Chemical Advantage of Quantum Computing over Traditional ApproachesM. Reiher, Zurich/CH
Keynote Speaker V
Accelerating drug design with AI – reality or hype?E. Nittinger, Mölndal/SE , G. Olanders, Mölndal/SE, G. Testa, Mölndal/SE, A. Tibo, Mölndal/SE, C. Tyrchan, Mölndal/SE
A. Shahraki, Marburg/DE , S. Gaitonde, Montréal/CA, S. Monteleone, Marburg/DE, C. Avet, Montréal/CA, F. Heydenreich, Marburg/DE, M. Persechino, Marburg/DE, J. Selent, Barcelona/ES, M. Bouvier, Montréal/CA, P. Kolb, Marburg/DE
F. Bernal, Jena/DE , M. Joch, Jena/DE, F. Keiff, Jena/DE, F. Kloss, Jena/DE
L. Eberlein, Cologne/DE , N. Vithani, Santa Fe/US, D. N. LeBard,, Santa Fe/US
J. P. Roth, Bonn/DE , J. Bajorath, Bonn/DE
C. Meyenburg, Hamburg/DE , U. Dolfus, Berlin/DE, F. Häse, Berlin/DE, K. Sommer, Frankfurt am Main/DE, H. Briem, Berlin/DE, M. Rarey, Hamburg/DE
J. Lübbers, Hamburg/DE , M. Rarey, Hamburg/DE, U. Lessel, Biberach (Riss)/DE
M. Strobl, Dortmund/DE , N. Tielker, Dortmund/DE, C. Chodun, Dortmund/DE, L. Eberlein, Dortmund/DE, J. Jasper-Eberlein, Dortmund/DE, S. M. Kast, Dortmund/DE
N. van Staalduinen, Aachen/DE , J. Sprenger, Aachen/DE, C. Bannwarth, Aachen/DE
A. M. L. Lacour, Saarbrücken/DE , H. Ibrahim, Saarbrücken/DE, A. Volkamer, Saarbrücken/DE, A. H. K. Hirsch, Saarbrücken/DE
L. S. Kersten, Düsseldorf/DE , M. Bonus, Düsseldorf/DE, S. Schott-Verdugo, Jülich/DE, H. Gohlke , Düsseldorf, Jülich/DE
T. El Harrar, Jülich/DE , H. Gohlke, Jülich/DE
M. Cairoli, Nijmegen/NL , F. Grisoni, Eindhoven/NL, J. J. Jansen, Nijmegen/NL
A. Öztürk, Berlin/DE , P. Kraus, Berlin/DE
Keynote Speaker VI
Molecular simulations as windows into cellular dynamicsG. Hummer, Frankfurt am Main/DE
C. Riplinger, Cologne/DE , G. Bistoni, Perugia/IT, F. Neese, Mülheim an der Ruhr/DE, M. E. Beck, Monheim/DE
K. van der Weg, Juelich/DE , A. Bazarova, Juelich/DE, E. Merdivan, Muenich/DE, H. Gohlke, Juelich/DE, S. Kesselheim, Juelich/DE, M. Piraud, Munich/DE
Session Chair: Stefan Kast
Short IntroductionKeynote Speaker VII
Towards Artificial Olfaction and AI Applications in BiomedicineH. Mouhib, Amsterdam/NL
J. Koopman, Cologne/DE , C. Riplinger, Cologne/DE, B. De Souza, Cologne/DE, A. Dittmer, Cologne/DE, M. Bursch, Cologne/DE
J. Sieg, Ludwigshafen/DE , C. Feldmann, Ludwigshafen/DE, J. Hemmerich, Ludwigshafen/DE, C. Stork, Ludwigshafen/DE, F. Sandfort, Ludwigshafen/DE, P. Eiden, Ludwigshafen/DE, M. Mathea, Ludwigshafen/DE
N. Tielker, Dortmund/DE, M. Lim, Mainz/DE , P. Kibies, Dortmund/DE, J. Gretz, Bochum/DE, B. Hein-Janke, Göttingen/DE, R. A. Mata, Göttingen/DE, P. Czodrowski, Mainz/DE, S. M. Kast, Dortmund/DE
euroSAMPL Supporter Talk
The HyDRA blind challenge on microhydration: past, present and futureM. Bödecker, Göttingen/DE
euroSAMPL Participant Talk 1
Simulations Plus Contribution to the euroSAMPL ChallengeR. Fraczkiewicz, Lancaster/US
euroSAMPL Participant Talk 2
euroSAMPL Challenge: Following the FAIR+R standard for QM and ML-based methods targeting pKa predictionP. Patel, Irving/US , M. Meduna, Irving/US, J. Dannatt, Irving/US
S. Tomasio, Cambridge/GB
euroSAMPL Participant Talk 3
Assessing the Accuracy of Machine Learning and IEFPCM-MST Continuum Solvation Models in the SAMPL Challenge Series for Physicochemical PropertiesA. Viayna, Barcelona/ES , S. Pinheiro, San José/CR, C. Curutchet, Barcelona/ES, F. J. Luque, Barcelona/ES, W. J. Zamora, San José/CR
V. Nainala, Jena/DE , N. Sharma, Jena/DE, N. Rayya, Jena/DE, S. Kanakam, Jena/DE, C. Steinbeck, Jena/DE
M. Sugimoto, Kumamoto/JP
G. Restrepo, Leipzig/DE , J. Jost, Leipzig/DE
Keynote Speaker VIII
Practical integration of cheminformatics, physics- and ML-based computational methods for therapeutic peptide designK. Deibler, Seattle/US , R. Alonso Ochoa, Måløv/DK, S. Swanson, Lexington/US, J. Damjanovic, Lexington/US
D. L. Mobley, Irvine/US , C. Zhang, Irvine/US, A. Caldaruse, Irvine/US
D. F. Victoria-Muñoz, Münster/DE , J. Menke, Göteborg/SE, N. Sanchez-Cruz, Mérida/MX, O. Koch, Münster/DE
CIC Award and Talk 1
Novel Algorithms for Large Combinatorial Fragment SpacesL. Bellmann, Hamburg/DE
CIC Award and Talk 2
Spectroscopy: From Bytes and Beams to the StarsD. Dinu, Wien/AT
S. Bazzi, Göttingen/DE , S. Sayyad, Göttingen/DE, R. A. Mata, Göttingen/DE
M. M. Scharf, Solna/SE , L. Grätz, Solna/SE, J. Kinsolving, Solna/SE, P. Kolb, Marburg/DE, G. Schulte, Solna/SE
Keynote Speaker IX
Molecular Theories for Condensed Chemical SystemsH. Sato, Kyoto/JP
N. Ulrich, Leipzig/DE , K. Voigt, Leipzig/DE, A. Böhme, Leipzig/DE, R. U. Ebert, Leipzig/DE
Keynote Speaker X
Data-Driven Materials Science for Energy-Sustainable ApplicationsJ. Cole, Cambridge/GB