18th German Conference on Cheminformatics (GCC 2024)

November 3 - 6, 2024 in Bad Soden am Taunus/Germany

Scientific Programme

10.30 a.m.
Registration opens

11.00 a.m. - 01.30 p.m.
Software Session (Pre-Conference Workshops)

Workshop Chemical Computing Group, Lecture Hall Tolstoi
Generative Design of New Candidate Compounds in the Binding Pocket
Presenters: Dr. Sarah Witzke and Guido Kirsten, Chemical Computing Group
Computational methods can help plot potential ways forward in a lead optimisation campaign, starting from a ligand-bound crystal structure or a plausible computationally docked structure for a known active lead molecule. 
This workshop will demonstrate some of these methods using the Molecular Operating Environment (MOE) software system - culminating in an application to combinatorially enumerate, optimise, filter and assess compounds in the context of their binding site, given a real medicinal chemistry reaction and databases of reagents


Workshop Cresset, Lecture Hall Bethmann
Combating antibiotic resistance through cheminformatics and structure-based virtual screening
Presenter: Oliver Hills, Cresset
In-silico virtual screening campaigns are often launched successfully when focused on diverse, yet molecularly significant, regions of chemical space, making use of accurate machine-learning and physics-based methods designed for bioactive compound identification.
In this workshop, we will delve into the example of Quorum Sensing Inhibition (QSI), an emerging therapeutic strategy to design antimicrobial compounds. QSI molecules stunt bacterial proliferation and nullify bacterial signalling and communication through competitive inhibition of the LasR transcriptional activator. Our mission is to discover novel compounds that can combat the escalating threat of antibiotic resistance and offer new solutions in the face of this global health crisis.During this session, Flare™, Cresset’s platform for ligand- and structure-based molecule design, will guide participants through a comprehensive virtual screening workflow aimed at identifying potent QSI hits. Leveraging open-source compound databases, the screening process will involve careful compound curation and ranked prioritization using advanced methodologies, including ML-QSAR, Molecular Docking, Electrostatic Complementarity and Clustering analysis. This multi-faceted approach ensures a thorough and data-driven exploration of chemical space for optimized hit identification.

01.45 p.m
Open Remarks

Session Chair: Stefan Kast Lecture Hall: Mendelssohn

Emerging Topics and Technologies I

Session Chair: Thomas Fox Lecture Hall: Mendelssohn

02.00 p.m.

Keynote Speaker I

Next Generation Pharmacophore Modeling: Novel Concepts & Tools for Molecular Design

T. Langer, Vienna/AT

02.40 p.m.
Structure-based RNA-ligand design – chances, challenges & success stories

C. Kersten, Mainz/DE

03.05 p.m.
Open Free Energy: An Open Source Ecosystem for Alchemistry

H. Baumann, Berlin/DE , I. Alibay, Cambridge/GB, B. Ries, Biberach an der Riss/DE, M. Henry, New York/US, J. Eastwood, New York/US, D. Mobley, Irvine/US

03.30 p.m.
Coffee Break and Exhibition

Company Presentation 1

Session Chair: Andrea Volkamer Lecture Hall: Mendelssohn

04.00 p.m.
AmberEHT Forcefield: Novel Approaches to Small Molecule Parameterization

S. Witzke, Cambridge/GB

Emerging Topics and Technologies II

Session Chair: Andrea Volkamer Lecture Hall: Mendelssohn

04.20 p.m.

Keynote Speaker II

Exploring Chemical Space Directly and Inversely

A. Tkatchenko, Luxembourg/LU

05.00 p.m.
Precedent Finder – Retrieving Pareto Optimal Chemical Reactions

C. A. Bauer, Göteborg/SE

05.25 p.m.

Keynote Speaker III

Machine learning for low-data drug discovery: lessons learned and opportunities

F. Grisoni, Eindhoven/NL

06.15 p.m.
Dinner Hotel Restaurant

After Dinner Talk

Session Chair: Stefan Güssregen Lecture Hall: Mendelssohn

08.00 p.m.

Keynote Speaker IV

Challenges for Demonstrating a Chemical Advantage of Quantum Computing over Traditional Approaches

M. Reiher, Zurich/CH

Cheminformatics, AI and Drug Discovery I

Session Chair: Miriam Mathea Lecture Hall: Mendelssohn

08.45 a.m.

Keynote Speaker V

Accelerating drug design with AI – reality or hype?

E. Nittinger, Mölndal/SE , G. Olanders, Mölndal/SE, G. Testa, Mölndal/SE, A. Tibo, Mölndal/SE, C. Tyrchan, Mölndal/SE

09.25 a.m.
Functionally selective (ant)agonists of the 5-HT2A receptor as a new paradigm for safer schizophrenia medications

A. Shahraki, Marburg/DE , S. Gaitonde, Montréal/CA, S. Monteleone, Marburg/DE, C. Avet, Montréal/CA, F. Heydenreich, Marburg/DE, M. Persechino, Marburg/DE, J. Selent, Barcelona/ES, M. Bouvier, Montréal/CA, P. Kolb, Marburg/DE

09.50 a.m.
Predictive approaches for hydride-Meisenheimer metabolism of antimycobacterial benzothiazinones

F. Bernal, Jena/DE , M. Joch, Jena/DE, F. Keiff, Jena/DE, F. Kloss, Jena/DE

10.15 a.m.
Coffee Break and Exhibition

Company Presentation 2

Session Chair: Emanuel Ehmki Lecture Hall: Mendelssohn

10.40 a.m.
Automated Identification of Cryptic Pockets for Drug Discovery

L. Eberlein, Cologne/DE , N. Vithani, Santa Fe/US, D. N. LeBard,, Santa Fe/US

Research Telegrams I

Session Chair: Emanuel Ehmki Lecture Hall: Mendelssohn

11.00 a.m.
Uncertainty Quantification in Compound Potency Prediction

J. P. Roth, Bonn/DE , J. Bajorath, Bonn/DE

11.12 a.m.
Galileo and the Quest for 3D Searching the Chemical Space

C. Meyenburg, Hamburg/DE , U. Dolfus, Berlin/DE, F. Häse, Berlin/DE, K. Sommer, Frankfurt am Main/DE, H. Briem, Berlin/DE, M. Rarey, Hamburg/DE

11.24 a.m.
Next Generation Topological Similarity Searching in Combinatorial Fragment Spaces

J. Lübbers, Hamburg/DE , M. Rarey, Hamburg/DE, U. Lessel, Biberach (Riss)/DE

11.36 a.m.
Tautomerization prediction as a testbed for theory-based experimental uncertainty analysis

M. Strobl, Dortmund/DE , N. Tielker, Dortmund/DE, C. Chodun, Dortmund/DE, L. Eberlein, Dortmund/DE, J. Jasper-Eberlein, Dortmund/DE, S. M. Kast, Dortmund/DE

11.48 a.m.
A Molecular Representation for Machine Learning Applications in Inorganic and Organic Chemistry with Full Support of Stereoisomerism based on the MolBar Framework

N. van Staalduinen, Aachen/DE , J. Sprenger, Aachen/DE, C. Bannwarth, Aachen/DE

12.00 p.m.
Conference Picture
12.05 p.m.
Lunch & mentoring lunch Hotel Restaurant

Research Telegrams II

Session Chair: Jonathan Pletzer-Zelgert Lecture Hall: Mendelssohn

01.30 p.m.
DockM8: All-in-One Open-Source Platform for Consensus Virtual Drug Screening

A. M. L. Lacour, Saarbrücken/DE , H. Ibrahim, Saarbrücken/DE, A. Volkamer, Saarbrücken/DE, A. H. K. Hirsch, Saarbrücken/DE

01.42 p.m.
Understanding Copper Transfer Mechanism and Structural Dynamics of Plant Receptor ETR1

L. S. Kersten, Düsseldorf/DE , M. Bonus, Düsseldorf/DE, S. Schott-Verdugo, Jülich/DE, H. Gohlke , Düsseldorf, Jülich/DE

01.54 p.m.
Energetic Evaluation of Aqueous Ionic Liquid Effects on Protein Residue Interactions

T. El Harrar, Jülich/DE , H. Gohlke, Jülich/DE

02.06 p.m.
Can Machines Optimise Decisions? Effectiveness of Cost-Sensitive Learning to Improve ADME-Tox Predictions Under Imbalance

M. Cairoli, Nijmegen/NL , F. Grisoni, Eindhoven/NL, J. J. Jansen, Nijmegen/NL

02.18 p.m.
The electronic transport properties of selected transition metal oxides using Wannier functions with different pseudopotentials

A. Öztürk, Berlin/DE , P. Kraus, Berlin/DE

02.30 p.m.
Short Break

Molecular and Protein Modelling, Simulation and Design I

Session Chair: Stefan Güssregen Lecture Hall: Mendelssohn

02.40 p.m.

Keynote Speaker VI

Molecular simulations as windows into cellular dynamics

G. Hummer, Frankfurt am Main/DE

03.20 p.m.
Deciphering key interactions of ligand binding to biomolecular targets using high-level quantum mechanical methods

C. Riplinger, Cologne/DE , G. Bistoni, Perugia/IT, F. Neese, Mülheim an der Ruhr/DE, M. E. Beck, Monheim/DE

03.55 p.m.
Towards the construction of a large foundation model for protein structures with message-passing Graph Neural Networks.

K. van der Weg, Juelich/DE , A. Bazarova, Juelich/DE, E. Merdivan, Muenich/DE, H. Gohlke, Juelich/DE, S. Kesselheim, Juelich/DE, M. Piraud, Munich/DE

04.20 p.m.
Coffee Break and Exhibition

Poster Session

Upper foyer

05.00 p.m.
Poster Session I (even no.)
06.00 p.m.
Poster Session II (odd no.)
07.00 p.m.
Free Time
08.00 p.m.
Moonlight Session Lecture Hall: Bethmann

Research Data and Property Prediction I

Session Chair: Stefan Kast Lecture Hall: Mendelssohn

08.45 a.m.

Session Chair: Stefan Kast

Short Introduction
08.50 a.m.

Keynote Speaker VII

Towards Artificial Olfaction and AI Applications in Biomedicine

H. Mouhib, Amsterdam/NL

09.30 a.m.
Validating the prediction of lowest-energy tautomers and conformers against experimental techniques

J. Koopman, Cologne/DE , C. Riplinger, Cologne/DE, B. De Souza, Cologne/DE, A. Dittmer, Cologne/DE, M. Bursch, Cologne/DE

09.55 a.m.
Practical Molecular Property Prediction with MolPipeline - A Scientific Industry Perspective

J. Sieg, Ludwigshafen/DE , C. Feldmann, Ludwigshafen/DE, J. Hemmerich, Ludwigshafen/DE, C. Stork, Ludwigshafen/DE, F. Sandfort, Ludwigshafen/DE, P. Eiden, Ludwigshafen/DE, M. Mathea, Ludwigshafen/DE

10.20 a.m.
Coffee Break and Exhibition

Research Data and Property Prediction II

Session Chair: David Mobley Lecture Hall: Mendelssohn

11.00 a.m.
Insights from the First euroSAMPL Blind Prediction Challenge

N. Tielker, Dortmund/DE, M. Lim, Mainz/DE , P. Kibies, Dortmund/DE, J. Gretz, Bochum/DE, B. Hein-Janke, Göttingen/DE, R. A. Mata, Göttingen/DE, P. Czodrowski, Mainz/DE, S. M. Kast, Dortmund/DE

11.30 a.m.

euroSAMPL Supporter Talk

The HyDRA blind challenge on microhydration: past, present and future

M. Bödecker, Göttingen/DE

11.45 a.m.

euroSAMPL Participant Talk 1

Simulations Plus Contribution to the euroSAMPL Challenge

R. Fraczkiewicz, Lancaster/US

12.10 p.m.

euroSAMPL Participant Talk 2

euroSAMPL Challenge: Following the FAIR+R standard for QM and ML-based methods targeting pKa prediction

P. Patel, Irving/US , M. Meduna, Irving/US, J. Dannatt, Irving/US

12.35 p.m.
Lunch & mentoring lunch Hotel Restaurant

Company Presentation 3

Session Chair: Ricardo Mata Lecture Hall: Mendelssohn

02.00 p.m.
Enhancing Drug Discovery and Data Collaboration with CDD Vault 

S. Tomasio, Cambridge/GB

Research Data and Property Prediction III

Session Chair: Session Chair: Ricardo Mata Lecture Hall: Mendelssohn

02.20 p.m.

euroSAMPL Participant Talk 3

Assessing the Accuracy of Machine Learning and IEFPCM-MST Continuum Solvation Models in the SAMPL Challenge Series for Physicochemical Properties

A. Viayna, Barcelona/ES , S. Pinheiro, San José/CR, C. Curutchet, Barcelona/ES, F. J. Luque, Barcelona/ES, W. J. Zamora, San José/CR

02.45 p.m.
nmrXiv: A FAIR, open-source, and consensus-driven NMR data repository and computational platform

V. Nainala, Jena/DE , N. Sharma, Jena/DE, N. Rayya, Jena/DE, S. Kanakam, Jena/DE, C. Steinbeck, Jena/DE

03.10 p.m.
Electronic-Structure Informatics: An Emerging Description Strategy of Molecules

M. Sugimoto, Kumamoto/JP

03.35 p.m.
Chemical space: a data-driven approach to its temporal unfolding

G. Restrepo, Leipzig/DE , J. Jost, Leipzig/DE

04.00 p.m.
Coffee Break and Exhibition

SOCIAL EVENT & DINNER

06.15 p.m.
Buses will leave from the H Hotel in Bad Soden to Frankfurt City at 6.15 p.m
07.00 p.m.
Guided tour of the Frankfurt Old Town (English language) afterwards Dinner in the restaurant "Dauth-Schneider"
10.30 p.m.
Returning to the conference hotel in Bad Soden is on your own (no transfer service)

Cheminformatics, AI and Drug Discovery II

Session Chair: Wolf-D. Ihlenfeldt Lecture Hall: Mendelssohn

08.45 a.m.

Keynote Speaker VIII

Practical integration of cheminformatics, physics- and ML-based computational methods for therapeutic peptide design

K. Deibler, Seattle/US , R. Alonso Ochoa, Måløv/DK, S. Swanson, Lexington/US, J. Damjanovic, Lexington/US

09.25 a.m.
Using computation to design and explore compound libraries, with an emphasis on DELs

D. L. Mobley, Irvine/US , C. Zhang, Irvine/US, A. Caldaruse, Irvine/US

09.50 a.m.
Machine Learning based Scoring Functions: Reasonable Decoy Selection for Automated Docking-based model creation.

D. F. Victoria-Muñoz, Münster/DE , J. Menke, Göteborg/SE, N. Sanchez-Cruz, Mérida/MX, O. Koch, Münster/DE

Award Session

Session Chair: Session Chair: Stefan Kast Lecture Hall: Mendelssohn

10.15 a.m.
Poster Prizes and Telegram Prizes
10.25 a.m.

CIC Award and Talk 1

Novel Algorithms for Large Combinatorial Fragment Spaces

L. Bellmann, Hamburg/DE

10.45 a.m.

CIC Award and Talk 2

Spectroscopy: From Bytes and Beams to the Stars

D. Dinu, Wien/AT

11.10 a.m.
Coffee Break and Exhibition

Molecular and Protein Modelling, Simulation and Design II

Session Chair: Mirko Buchholz Lecture Hall: Mendelssohn

11.45 a.m.
Roadmap towards automated discovery of NOS linkages beyond lysine-cysteine

S. Bazzi, Göttingen/DE , S. Sayyad, Göttingen/DE, R. A. Mata, Göttingen/DE

12.10 p.m.
Discovery of small molecule modulators for FZD7 using in silico docking screens

M. M. Scharf, Solna/SE , L. Grätz, Solna/SE, J. Kinsolving, Solna/SE, P. Kolb, Marburg/DE, G. Schulte, Solna/SE

12.35 p.m.
Lunch & mentoring lunch Hotel Restaurant

Computational Materials Science

Session Chair: Ricardo Mata Lecture Hall: Mendelssohn

02.00 p.m.

Keynote Speaker IX

Molecular Theories for Condensed Chemical Systems

H. Sato, Kyoto/JP

02.40 p.m.
Enhanced prediction of the water solubility using a deep learning algorithm

N. Ulrich, Leipzig/DE , K. Voigt, Leipzig/DE, A. Böhme, Leipzig/DE, R. U. Ebert, Leipzig/DE

03.05 p.m.

Keynote Speaker X

Data-Driven Materials Science for Energy-Sustainable Applications

J. Cole, Cambridge/GB

03.45 p.m.
Closing Remarks Stefan Kast, Stefan Güssregen